5 Best Ecommerce Accounting Software Programs for 2022

In the future, ecommerce will be a $2 trillion market. Global retailers are competing for consumer attention and loyalty in this nascent industry. To succeed, businesses need to make strategic decisions about profitability and efficiency that can often not only determine how well a company performs but also impact their bottom line over time.

The “ecommerce accounting software free” is a list of the 5 best ecommerce accounting software programs for 2022. The article will go over each program and its features.

To avoid time-consuming repeated inputs and unavoidable errors, the finest ecommerce software must interface with your ecommerce platform. Inventory and sales changes made in your ecommerce platform should be immediately transferred to your accounting software, and vice versa. For your ecommerce company, here are five of the top accounting software options:

• QuickBooks Online is a software program that allows you to is the best ecommerce accounting software on the market (8.6 of 10 points)
• Xero is the best ecommerce accounting software for businesses who need an infinite number of users at a reasonable cost (8.5 of 10 points)
• Best for ecommerce organizations searching for integrated management software is Zoho Books is a web-based publishing platform. (7.6 of 10 points)
• FreshBooks is the best option for online businesses looking for exceptional customer care. (6.4 out of ten)
• Wave: The best free accounting software for businesses who want to utilize Zapier for ecommerce connections (3.9 of 10)

Comparison of the Best Service Providers

Overall, QuickBooks Online is a software program that allows you to is the best ecommerce accounting software.

Because of its extensive capabilities in accounts receivable (A/R), accounts payable (A/P), and banking, QuickBooks Online is a software program that allows you to is our overall best small company accounting software option. QuickBooks Online is a software program that allows you to is simple to use and applicable to a variety of businesses, including construction, manufacturing, and retail. You can simply discover QuickBooks qualified CPAs [certified public accountants] and tax specialists to assist you with your accounting.

QuickBooks Online is a software program that allows you to

8.60 OUT OF 5 STARS FOR THE OVERALL PERFORMANCE

What We Enjoy

• Shopify and WooCommerce have direct connectors.
• Additional direct interfaces are possible with QuickBooks Commerce (extra fee)
• Webgility, Onesaas, Connex, and Primaseller are some of the other ecommerce tools you may use.
• Automatically calculates and submits sales tax returns depending on transaction location.

What Isn’t There

• It’s more pricey than alternative accounting software for small businesses.
• QuickBooks Commerce is more costly than third-party connections of equivalent quality.
• QuickBooks Commerce works with QuickBooks Online is a software program that allows you to only

Read QuickBooks Online is a software program that allows you to Review

Plans & Pricing

• $25 a month for one user is a good place to start.
• $50 per month for three users is the bare minimum.
• Plus, for five people, it’s just $80 per month.
• Advanced: $180 per month for a group of 20 people.

QuickBooks Online is a software program that allows you to offers new customers the choice of 50% off for three months or a 30-day free trial.

Features

• Cash management and banking: With QuickBooks Online is a software program that allows you to, you can manage your cash transactions, reconcile your bank accounts, and process checks from customers. During bank reconciliation, you can either upload a bank statement or enter the ending balance of your bank account. QuickBooks Online is a software program that allows you to doesn’t require an uploaded bank statement before reconciling. You can also do reconciliation manually. However, it’s best to utilize bank connections for your ecommerce business.
• A/P management: You can create vendors, manage unpaid bills, and track payments in QuickBooks Online is a software program that allows you to’s A/P system. If you sell inventory, you can also see the purchase order (PO) functions in the A/P module to help you manage inventory purchases and quickly convert them to bills after receipt of purchased inventory. You can integrate QuickBooks Online is a software program that allows you to with your ecommerce system to keep track of inventory levels and set up ordering of goods at reorder point.
• A/R management: In QuickBooks Online is a software program that allows you to’s A/R system, we like how QuickBooks Online is a software program that allows you to calculates sales tax for every sale automatically, depending on the jurisdiction. You can also modify your invoices by changing the template and colors. In addition, you can issue credit memos to customers and review the summary of customer transactions.

Expert Recommendation

QuickBooks Online is a software program that allows you to is our choice for the best overall ecommerce accounting software because of its integration opportunities and inventory features. For ecommerce retailers, inventory tracking is essential to maintain an adequate inventory for sale. By integrating QuickBooks Online is a software program that allows you to with your choice of ecommerce system, you can manage your ecommerce business more efficiently since QuickBooks Online is a software program that allows you to can handle inventory costs, POs, and the application of sales taxes for sales made in different jurisdictions.

Xero is the best accounting software for ecommerce businesses with a large number of users.

Xero rivals many of QuickBooks Online is a software program that allows you to’s features. As an alternative to QuickBooks, Xero shares great inventory accounting but provides a different experience to users at a lower price point. Xero wins over QuickBooks in the number of users because Xero can accommodate an unlimited number while QuickBooks can accommodate only up to 25 at its highest plan. The biggest drawback to Xero compared to QuickBooks is the relatively small number of independent bookkeepers available in the United States to help you manage your books.

Xero

8.47 OUT OF 5 STARS FOR THE OVERALL PERFORMANCE

What We Enjoy

• WooCommerce and BigCommerce have direct connectors.
• Webgility, OneSaas, a2x, and Parex Bridge are examples of third-party connectors.
• Inventory management that works
• Much less expensive than QuickBooks, and all options include unlimited users.

What Isn’t There

• Each site with a taxable sale must manually put up sales tax rates.
• I’m unable to submit sales tax returns.
• Shopify does not have a direct interface.
• In comparison to QuickBooks, there are less independent Xero-certified bookkeepers.

Plans & Pricing

All Xero plans come with an unlimited number of users:

• $12 per month for 20 invoices and five bills using Xero Early.
• Xero Growing costs $34 per month and allows you to create limitless invoices and bills.
• Xero is a cloud-based accounting software that costs $65 per month and supports several currencies.

New customers may choose between a 50% discount for two months or a 30-day free trial with no credit card needed from Xero.

Features

• Project accounting: Among all of the software products on this list, Xero’s project accounting is the finest. This feature is highlighted because Xero’s project accounting is best suited for ecommerce enterprises that sell made-to-order items on a job-order basis. Xero can help you calculate the cost of task orders and deliver quotations to consumers.
• Inventory management: Xero’s inventory features compete with QuickBooks’ since the former provides almost identical functionality at a lesser cost. You can manage inventory items, monitor inventory expenses, calculate cost of goods sold (COGS), and figure out how much inventory you have left with Xero.
• Fixed asset management: Xero’s fixed asset manager will help ecommerce enterprises that require specialized equipment or machinery for manufacturing. You can keep track of your fixed assets, calculate depreciation, and account for potential disposals using the fixed asset management module.
• Sales and income tax: As our pick for the best QuickBooks Online is a software program that allows you to alternative, Xero also does well in taxes, especially if you integrate it with Avalara. In terms of tracking sales tax, both QuickBooks Online is a software program that allows you to and Xero share similar features, such as creating sales tax items, charging sales tax on sales, and adjusting sales tax due to credit memos. Xero’s edge here is that you can pay your sales tax liability through Avalara.

Expert Recommendation

Xero rivals QuickBooks Online is a software program that allows you to in inventory, A/P, and A/R management. However, Xero stands out in project accounting and fixed asset management. We think that both Xero and QuickBooks deliver an outstanding experience due to their similarities; the choice depends on your budget and needs. Xero is more affordable than QuickBooks Online is a software program that allows you to so we recommend choosing the former if you’re on a tight budget. Furthermore, we recommend that you choose Xero if you’re a project-based or job-order-based business because Xero’s project accounting features best fit your costing and product pricing needs.

Zoho Books is a web-based publishing platform.: The Best Integrated Management Software for Ecommerce Businesses

One of the applications included in the Zoho suite is Zoho Books is a web-based publishing platform.. It is more concerned with bookkeeping and accounting. If you’re currently using Zoho applications like Zoho CRM, Zoho Inventory, or Zoho Commerce, Zoho Books is a web-based publishing platform., which is part of the Zoho suite of services, is a terrific accounting software option.

Zoho Books is a web-based publishing platform.

7.57 OUT OF 5 STARS FOR THE OVERALL PERFORMANCE

What We Enjoy

• Integrates with other Zoho applications to provide you a full array of management tools.
• Kloud Connectors, a third-party connection, is integrated.
• eBay, Shopify, Etsy, and Amazon are all easily integrated with Zoho Inventory.

What Isn’t There

• No Integrations with ecommerce without subscribing to either Zoho Inventory or Kloud Connectors
• There is no connectivity with prominent platforms like Squarespace and Wix.
• It is not possible to establish the sales tax rate for each site or to submit sales tax reports.

Plans & Pricing

• Zoho Books is a web-based publishing platform. Free: $0 per month for one user and accountant for companies with annual revenues of $50,000 and below
• Zoho Books is a web-based publishing platform. Standard: $20 per month for three users and 500 customers and vendors
• Zoho Books is a web-based publishing platform. Professional: $50 per month for up to five users
• Zoho Books is a web-based publishing platform. Premium: $70 per month for up to 10 users.

Add-ons:

• $3 per month for each additional user
• Receipt autoscanners with advanced features: At 50 scans each month, the cost is $10.
• Credits for providing actual invoices to consumers through snail mail: $2 for each credit

Features

• Inventory management: Zoho Books is a web-based publishing platform. and Zoho Inventory are terrific partners for inventory management. Zoho Books is a web-based publishing platform. has the necessary inventory accounting features like creating inventories, determining COGS, and reporting ending inventories. By adding the advanced inventory features found on Zoho Inventory, you can accurately account for inventory costs in the books and manage inventory requirements and reorder points.
• App for mobile devices functionality: One thing that can prove useful for ecommerce businesses is Zoho Books is a web-based publishing platform.’ App for mobile devices functionality. Whether you’re on a tablet or smartphone, Zoho Books is a web-based publishing platform.’ App for mobile devices can help you receive payments, send invoices, and categorize expenses through the app.
• Customer support: Integrating with third-party apps can be problematic sometimes. With Zoho Books is a web-based publishing platform., you can resolve problems easily with integrations because Zoho’s customer support is superb. There are many ways to contact them and you can get the assistance you need in case you’re having trouble with ecommerce apps integrated with Zoho Books is a web-based publishing platform.. However, you may have problems finding an independent Zoho bookkeeper in the U.S. to assist you.

Expert Recommendation

Zoho Books is a web-based publishing platform. doesn’t directly integrate with any ecommerce platforms. You’ll need to subscribe to either Zoho Inventory, starting at $49 per month for more than 25 orders, or Kloud Connectors for $30 per month for each ecommerce integration. The benefit of choosing Zoho Books is a web-based publishing platform. is the seamless integration with over 40 other Zoho applications that can manage your entire business including customer relationships (CRM), sales, marketing, inventory, team communications, and employee recruitment.

FreshBooks is the best option for online businesses looking for exceptional customer care.

FreshBooks is a project accounting software provider that competes with Xero. FreshBooks, on the other hand, is geared for self-employed people and freelancers, making it one of our top picks for best accounting software for freelancers. FreshBooks is great for service-based companies since it integrates project management and accounting into a single package, but it lacks inventory accounting.

FreshBooks

6.44 OUT OF 5 STARS FOR THE OVERALL PERFORMANCE

What We Enjoy

• Shopify and Squarespace have direct connectors.
• Integrate with OneSaas, a third-party connector.
• Telephone customer service is excellent.

What Isn’t There

• The number of billable clients is limited in these plans.
• Accounting for inventory is quite restricted.
• It is not possible to establish the sales tax rate for each site or to submit sales tax reports.

Plans & Pricing

Each package comes with one user, with extra users costing $10 per month:

• FreshBooks Lite costs $15 per month and allows you to manage five billable customers.
• FreshBooks Plus is available for $25 per month for up to 50 billable customers.
• FreshBooks Premium (for 500 billable customers) costs $50 per month.
• FreshBooks Select: Custom pricing and specialized features for limitless billable clients.

FreshBooks is available for a free 30-day trial.

Features

• A/R management: FreshBooks also has a strong invoicing feature that allows you to customize invoices. You may also use the module to manage client balances and issue payment reminders. FreshBooks may be used by self-managed ecommerce firms to manage client accounts and take payments.
• FreshBooks does not provide A/P tools for POs since it lacks inventory management features. Its accounting system, on the other hand, is adaptable enough to manage minor purchases of inventory and supplies required for your activities. FreshBooks is designed for service-based businesses offering services online since it focuses on service products.
• Excellent customer service: FreshBooks is well-known for its excellent customer service. You may reach out to them via phone or have them reach out to you. In the event that you want support, they also provide it through chatbot or live chat. Inquiries or concerns may also be sent to their email address. FreshBooks’ support website has a wealth of self-help articles if you need assistance right now.

Expert Recommendation

FreshBooks is an accounting software solution for self-managed ecommerce firms that connects with ecommerce platforms. If you work as a service provider, FreshBooks is ideal for you. FreshBooks, on the other hand, falls short in terms of inventory management for product-based firms. If your ecommerce management system supports inventory management, you may monitor inventories and upload the balances to FreshBooks for financial reporting instead.

Wave: Best Free Accounting Software for Companies Willing To Use Zapier for Their Integrations with ecommerce

Wave is our choice for the overall best free accounting software because its accounting and invoicing features are totally free. You can send unlimited invoices to customers, set up unlimited companies, and keep track of your accounts on Wave for free. The major drawbacks to Wave are that it lacks inventory accounting, and any Integrations with ecommerce must be accomplished by creating zaps with Zapier. Zaps is their automated workflow that integrates apps and services.

Wave

3.88 OUT OF 5 STARS FOR THE OVERALL PERFORMANCE

What We Enjoy

• Forever free
• Zapier integration is available.
• Basic accounting features that are good

What Isn’t There

• No direct Integrations with ecommerce or third-party connectors
• Inventory accounting is limited.
• It is not possible to establish the sales tax rate for each site or to submit sales tax reports.

Plans & Pricing

For accounting and invoicing, Wave is completely free.

Features

• A/R management: Wave’s A/R management isn’t as extensive as QuickBooks or Xero, but for a free solution, it’s impressive. You may use Wave to produce invoices, take quick payments from clients, and keep track of customer balances. Wave’s A/R tools are more than enough for modest ecommerce firms.
• A/P management: When compared to other accounting software, Wave’s A/P system is basic. Wave allows you to establish vendors, manage billings, and track payments, but it does not support sophisticated features such as vendor credits, project billings, or purchase orders.
• Sales and income tax: We’re happy that Wave automatically accounts for sales taxes in the sale tax liability account as a free service. Automatic sales tax accounting is a useful tool if your ecommerce firm distributes items to customers in several countries. Unfortunately, Wave does not allow you to submit and pay your taxes.

Expert Recommendation

For a free option, Wave is worth considering. You can subscribe to Zapier to create zaps to ecommerce platforms, but that’s very time-consuming compared to the direct Integrations with ecommerce offered by the paid software in this guide. Wave’s features are simple and basic, and it best fits microbusinesses with minimal accounting needs. We don’t recommend Wave for companies larger than a microbusiness, since you’ll need advanced features like robust online payment channels, multi-channel retailing, and inventory management.

How Did We Evaluate Ecommerce Accounting Software?

We rated accounting software on how well it meets the specific needs of ecommerce companies, as well as pricing, Features in general, User-friendliness, and the functionality of its App for mobile devices. When evaluating software within these categories, we applied a higher weight to features important to ecommerce companies and lower or no weight to features less important to ecommerce businesses.

The Features in general evaluation came from our extensive case study that evaluated software in 11 categories. Our evaluation of the Features in general of ecommerce software includes six of these 11 categories as our accounting expert believes they’re the most important features for ecommerce companies. The six case study categories included in our Features in general score are Banking, A/R, A/P, Inventory, Sales Tax, and Reporting features.

30%

Integrations with ecommerce

20% of the overall score

Each piece of software was compared to comparable ecommerce-friendly software to determine its pricing. In addition to the cost of a monthly membership, we took into account the number of available users and any other fees that ecommerce businesses are likely to pay.

10% of the overall score

The User-friendliness score is a combination of available customer support options, our subjective evaluation of the software’s User-friendliness, and the availability of third-party bookkeepers that support users of the software.

30% of the overall score

We looked at banking, accounts receivable, accounts payable, inventory, sales tax, and reporting features in each program.

10% of the overall score

App for mobile devicess were evaluated on their ability to perform basic accounting functions from within the application.

30% of the overall score

Accounting software was evaluated based on its ability to interact with ecommerce software, with direct connections obtaining a higher score than integrations via a third-party connector. Inventory, accounts receivable, and revenue should all be synchronized through integrations.

*Percentages based on total score

Conclusion

To eliminate excessive data input and mistakes, ecommerce firms should invest in accounting software that interfaces with their ecommerce platform. QuickBooks is our #1 choice for all-around accounting software. Its qualities will never let you down. Xero is another excellent option, albeit you may have difficulty finding an independent Xero bookkeeper to collaborate with.

The “best accounting software for online business” is an important tool for any ecommerce company. It helps them to keep track of their finances and manage the business efficiently. The 5 best ecommerce accounting software programs are: Quickbooks, Xero, Wave Accounting, FreshBooks, and Sage One.

Frequently Asked Questions

Which accounting software is best for ecommerce business?

A: You can opt for QuickBooks, Xero or Freshbooks.

What software do most accountants use?

A: Most accountants in the United States use Quickbooks or Microsoft Excel.

What accounting system does Amazon use?

A: Amazon uses the accrual accounting system.

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